nsol::NeuronMorphology Class Reference

A class to represent morphology of neurons. More...

#include <NeuronMorphology.h>

Inheritance diagram for nsol::NeuronMorphology:

Collaboration diagram for nsol::NeuronMorphology:

Public Member Functions
	NeuronMorphology (void)
	Default Neuron class constructor. More...
	NeuronMorphology (SomaPtr soma)
SomaPtr	soma (SomaPtr soma)
	Method to set the neuronal soma. More...
NeuritePtr	addNeurite (NeuritePtr neurite)
	Method to add a new neurite to the neuron. More...
Dendrites *	dendrites (void) const
	Method to get all the dendrites in a container. More...
Dendrites *	basalDendrites (void) const
	Method to get all the basal dendrites in a container. More...
Dendrites *	apicalDendrites (void) const
	Method to get all the apical dendrites in a container. More...
DendritePtr	apicalDendrite (void) const
	Method to get the first apical dendrite. More...
Axons *	axons () const
	Method to get all the axons in a container. More...
virtual Neurites &	neurites (void)
const Neurites &	neurites (void) const
virtual Neurons &	parentNeurons (void)
const Neurons &	parentNeurons (void) const
SomaPtr	soma (void)
virtual NeuronMorphologyStats *	stats (void)
void	addParentNeuron (NeuronPtr neuron)
virtual NeuronMorphologyPtr	asNeuronMorphology (void)
virtual NeuronMorphologyPtr	clone (void) const
bool	operator== (NeuronMorphology &other)
bool	operator!= (NeuronMorphology &other)
Public Member Functions inherited from nsol::Morphology
Sections &	sections (void)
Public Member Functions inherited from nsol::Object
virtual ColumnPtr	asColumn (void)
virtual MiniColumnPtr	asMiniColumn (void)
virtual NeuronPtr	asNeuron (void)
virtual SectionPtr	asSection (void)
virtual NodePtr	asNode (void)
virtual ObjectWithProperties *	properties (void)
virtual ObjectPtr	create (void)

Protected Attributes
SomaPtr	_soma
Neurites	_neurites
Neurons	_parentNeurons
Protected Attributes inherited from nsol::Morphology
Sections	_sections
	Morphology sections.

Detailed Description

A class to represent morphology of neurons.

TODO: extend long description

Definition at line 50 of file NeuronMorphology.h.

Constructor & Destructor Documentation

nsol::NeuronMorphology::NeuronMorphology

(

void

)

Default Neuron class constructor.

TODO: construct protected objects

Member Function Documentation

NeuritePtr nsol::NeuronMorphology::addNeurite

(

NeuritePtr

neurite

)

Method to add a new neurite to the neuron.

Parameters

neurite

pointer to the neurite to be added.

Returns

pointer to the added neurite.

Referenced by nsol::AscReaderTemplated< ASC_READER_TEMPLATE_CLASSES >::readMorphology(), and nsol::SwcReaderTemplated< SWC_READER_TEMPLATE_CLASSES >::readMorphology().

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DendritePtr nsol::NeuronMorphology::apicalDendrite

(

void

)

const

Method to get the first apical dendrite.

Returns

pointer to the apical dendrite.

Dendrites* nsol::NeuronMorphology::apicalDendrites

(

void

)

const

Method to get all the apical dendrites in a container.

Memory for the container is allocated.

Returns

pointer to the container of Dendrites

Axons* nsol::NeuronMorphology::axons

(

)

const

Method to get all the axons in a container.

Memory for the container is allocated.

Returns

pointer to the container of Axons.

Dendrites* nsol::NeuronMorphology::basalDendrites

(

void

)

const

Method to get all the basal dendrites in a container.

Memory for the container is allocated.

Returns

pointer to the container of Dendrites

Dendrites* nsol::NeuronMorphology::dendrites

(

void

)

const

Method to get all the dendrites in a container.

Memory for the container is allocated.

Returns

pointer to the container of Dendrites

SomaPtr nsol::NeuronMorphology::soma

(

SomaPtr

soma

)

Method to set the neuronal soma.

Parameters

soma	pointer to the soma to be setted.

Returns

pointer to the setted soma

Referenced by nsol::AscReaderTemplated< ASC_READER_TEMPLATE_CLASSES >::_ReadSoma(), nsol::SwcReaderTemplated< SWC_READER_TEMPLATE_CLASSES >::readMorphology(), and nsol::AscReaderTemplated< ASC_READER_TEMPLATE_CLASSES >::readMorphology().

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The documentation for this class was generated from the following file:

• NeuronMorphology.h