nsol::Simplifier Class Reference

A singleton class to operate over morphologies. More...

#include <Simplifier.h>

Collaboration diagram for nsol::Simplifier:

Public Types
enum	TSimplificationMethod { DELETE_ALL = 0, DIST_NODES, DIST_NODES_RADIUS, ANGLE_MIN }
	Methods of simplification.

Public Member Functions
NeuronMorphologyPtr	simplify (NeuronMorphologyPtr morpho_, TSimplificationMethod simplMethod_=DELETE_ALL, float tolerance_=0.1, bool clone_=false)
	Method to simplify the morphology given by the simplification function selected, the simplification can be made over the original given morphology or over a clone of this morphology. More...
MorphologyPtr	simplify (MorphologyPtr morpho_, TSimplificationMethod simplMethod_=DELETE_ALL, float tolerance_=0.1)
NeuronMorphologyPtr	adaptSoma (NeuronMorphologyPtr morpho_, bool clone_=false)
	Method to correct the neuronal morphology to avoid errors in the generation of the neuronal soma mesh. More...
NeuronMorphologyPtr	adaptBifurcations (NeuronMorphologyPtr morpho_, float tolerance_=0.9f, bool clone_=false)
	Method to correct the neuronal morphology to fix the intersecting bifurcations. More...
NeuronMorphologyPtr	cutout (NeuronMorphologyPtr morpho_, bool clone_=false)
	Method to cutout the neuronal morphology based in the nodes importances. More...
MorphologyPtr	repairSections (MorphologyPtr morpho_)
	Method to repair morphological traces, deleting sections composed only by two nodes and whose distance between nodes is less than the radius of the segment that they represent. More...
	Simplifier (Simplifier const &)=delete
void	operator= (Simplifier const &)=delete

Static Public Member Functions
static Simplifier *	Instance ()
	Returns the instance of the singelton class. More...

Detailed Description

A singleton class to operate over morphologies.

Provides functionality to the simplification, the adaptation and the cutout of neuronal morphologies

Definition at line 41 of file Simplifier.h.

Member Function Documentation

NeuronMorphologyPtr nsol::Simplifier::adaptBifurcations	(	NeuronMorphologyPtr	morpho_,
		float	tolerance_ = 0.9f,
		bool	clone_ = false
	)

Method to correct the neuronal morphology to fix the intersecting bifurcations.

Parameters

morpho_	neuronal morphology to correct
tolerance_	used to determine the maximum opening angle of a bifurcation
clone_	if true the morphology is clone before the correction if false the correction is made over the orignal morphology

NeuronMorphologyPtr nsol::Simplifier::adaptSoma	(	NeuronMorphologyPtr	morpho_,
		bool	clone_ = false
	)

Method to correct the neuronal morphology to avoid errors in the generation of the neuronal soma mesh.

Parameters

morpho_	neuronal morphology to correct
clone_	if true the morphology is clone before the correction if false the correction is made over the orignal morphology

NeuronMorphologyPtr nsol::Simplifier::cutout	(	NeuronMorphologyPtr	morpho_,
		bool	clone_ = false
	)

Method to cutout the neuronal morphology based in the nodes importances.

Parameters

morpho_	neuronal morphology to cutout
clone_	if true the morphology is clone before the cutout if false the cutout is made over the orignal morphology

static Simplifier* nsol::Simplifier::Instance ( )

static

Returns the instance of the singelton class.

Returns

the Simplifier instance

MorphologyPtr nsol::Simplifier::repairSections

(

MorphologyPtr

morpho_

)

Method to repair morphological traces, deleting sections composed only by two nodes and whose distance between nodes is less than the radius of the segment that they represent.

Parameters

morpho_

neuronal morphology to unify sections

NeuronMorphologyPtr nsol::Simplifier::simplify	(	NeuronMorphologyPtr	morpho_,
		TSimplificationMethod	simplMethod_ = DELETE_ALL,
		float	tolerance_ = 0.1,
		bool	clone_ = false
	)

Method to simplify the morphology given by the simplification function selected, the simplification can be made over the original given morphology or over a clone of this morphology.

Parameters

morpho_	neuronal morphology to simplify
simplMethod_	to select the function used to simplify
tolerance_	used for different simplification function
clone_	if true the morphology is clone before the simplification if false the simplification is made over the orignal morphology

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The documentation for this class was generated from the following file:

• Simplifier.h